FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925780

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925780
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478413
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT59561.2449494474439449No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29280.6120235027058212No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24560.5133639763133526No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19180.4009088381795646No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC17090.35722273433205204No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16920.3536693191865605No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15330.32043443635519936No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15110.3158358991080928No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14430.301622238526127No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12110.2531285730111849No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11970.2502022311266625No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11960.2499932067063395No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11270.23557052170405068No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10540.22031173902046977No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10350.21634027503433226No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9390.19627393068332175No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG8720.18226929452167898No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8290.17328124444778883No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG8250.17244514676649672No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8140.17014587814294346No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8070.16868270720068224No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7770.16241197459099146No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7640.15969465712679212No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7390.15446904661871647No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7110.14861636284967172No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7060.14757124074805658No Hit
AACTCTCCAACCGCTGAAGAGTGCGGTTACT6870.1435997767619191No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6610.1381651418335204No Hit
AACTCTCCAACTGTTGAAGAATGTGGTTATA6070.12687782313607698No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5700.11914391958412501No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5230.10931977182894277No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5100.10660245436474344No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA4910.10263099037860592No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4800.10033172175505266No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)