FastQCFastQC Report
Wed 31 May 2023
EGAF00007925782

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925782
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482568
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT60771.259304388189851No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28710.5949420599791118No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25170.5215845228030039No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18680.38709570464680626No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC17220.356840901178694No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17040.3531108569155021No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16070.33301006283052337No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15200.31498151555842907No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13960.2892856550786625No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13390.2774738482452214No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12950.26835596226853003No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11990.2484623928648398No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11980.24825516818355134No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10540.21841481407801597No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10240.21219807363936274No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9590.19872846935561414No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG9100.18857445997248057No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG8910.18463719102800022No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8660.1794565739957892No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8250.17096036206296317No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8060.1670230931184828No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8010.16598696971204058No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7720.15997745395467583No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7380.15293181479086884No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7330.15189569138442666No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6760.14008388455098555No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6380.13220934666202483No Hit
AACTCTCCAACCGCTGAAGAGTGCGGTTACT6170.12785762835496758No Hit
AACTCTCCAACTGTTGAAGAATGTGGTTATA6030.12495648281692943No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5550.11500969811508431No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5400.1119013278957577No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5290.10962185640158485No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5070.10506291341323917No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)