FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456429
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA23750.5203437993641946No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21900.4798117560452995No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19880.4355551465835869No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16510.36172110010538333No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC16080.3523001386853158No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14880.32600908355954594No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13890.3043189630807859No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13010.28503885598855466No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12580.27561789456848707No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12370.2710169599214774No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11440.2506413921990058No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10540.23092310085467838No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9770.21405300714897607No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9240.20244112446842774No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG8550.1873237677711101No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8290.18162737249385993No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA8160.17877917485523487No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8060.17658825359475405No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7500.16431909453606147No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG7430.1627854496537249No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7040.1542408567378497No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6990.1531453961076093No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6940.15204993547736886No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6480.14197169767915713No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6040.13233164413304152No Hit
CGGCTGGTCCTCTGCAGTAGCTTCTTCATCGGACAGGTAATCCG6030.13211255200699343No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5850.12816889373812793No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5830.1277307094860318No Hit
CGGCTGGTCTTCGGCCGTTGCTTCATCGTCGTGCAGATAATCCG5820.1275116173599837No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5730.12553978822555095No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT5420.11874793231806043No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5270.11546155042733919No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT5120.11217516853661796No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5020.10998424727613715No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG4840.10604058900727166No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4780.10472603625098317No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)