FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925784

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925784
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456429
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT57351.25649334288575No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35890.786321640386566No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28080.6152106899430142No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23720.5196865229860504No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17290.3788102859371337No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC16200.3549292441978928No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15530.34025007175267125No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15170.33236275521494035No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14810.3244754386772094No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12960.28394339535831425No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12140.2659778410223715No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10970.24034406227474592No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10890.23859132526636126No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10510.23026582447653413No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9990.21887303392203386No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9540.2090138882498702No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8790.19258197879626404No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG8490.18600921501482157No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8020.17571188509056174No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7820.17133004256960008No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG7560.16563364729234997No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7370.1614708968974364No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7200.157746330754619No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7180.15730814650252284No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7150.1566508701243786No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6940.15204993547736886No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6290.13780894728424353No Hit
AACTCTCCAACCGCTGAAGAGTGCGGTTACT5900.12926435436836836No Hit
AACTCTCCAACTGTTGAAGAATGTGGTTATA5880.12882617011627218No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5580.12225340633482973No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5430.1189670244441085No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5110.11195607641056987No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4910.10757423388960824No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)