FastQCFastQC Report
Sun 21 May 2023
EGAF00007925791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395477
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6720.16992138607302068No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6690.16916280845662326No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5710.1443826063209744No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5470.1383139853897951No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5010.1266824619383681No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4220.10670658470656955No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4190.10594800709017212No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4100.10367227424097988No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)