FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925792

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925792
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395477
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA13150.33250985518753307No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8430.21316031020767326No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7860.19874733549612242No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6460.16334704673090977No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5850.14792263519749568No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5030.1271881803492997No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4690.11859096736346235No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4410.11151090961041982No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4200.10620086629563792No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4100.10367227424097988No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)