FastQCFastQC Report
Wed 31 May 2023
EGAF00007925795

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925795
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398039
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6460.16229565444592112No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6450.16204442278269215No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5860.14722175465218232No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4800.12059119834991043No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC4800.12059119834991043No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4410.11079316348398022No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4190.10526606689294266No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4140.10400990857679775No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)