FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925796

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925796
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398039
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA12640.31755682232143084No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8220.2065124271742216No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7790.19570946565537548No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6180.15526116787550967No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5630.14144342639791577No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5210.13089169654229862No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4640.11657149173824675No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4510.11330548011627001No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4490.11280301678981204No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4240.10652222520908755No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)