FastQCFastQC Report
Sun 21 May 2023
EGAF00007925797

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925797
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences375085
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6490.17302744711198795No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6150.16396283509071277No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5280.14076809256568512No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC4650.12397189970273406No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4490.11970619992801632No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4400.1173067438047376No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4300.114640681445539No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)