FastQCFastQC Report
Wed 31 May 2023
EGAF00007925801

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925801
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426043
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16550.38845844198825No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13700.32156378581504685No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10940.2567815924683659No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10030.235422246111308No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9670.2269723948052192No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8660.20326586752980333No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7080.16618040901974684No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6710.1574958396218222No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6440.1511584511422556No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6290.1476376797647186No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6050.1420044455606594No Hit
GCGCAGTGGCGGGGAGCCGTCGTTTTCGGAGGACGGCGGCGGAC5760.13519762089742116No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT5570.13073797715254093No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4460.10468426895876706No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)