FastQCFastQC Report
Sun 21 May 2023
EGAF00007925802

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925802
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426043
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA34350.8062566454559751No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15310.3593533986006107No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13730.3222679400905542No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11040.2591287733867239No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10290.24152491649903884No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8650.20303114943796752No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7390.17345666986665664No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7230.16970118039728385No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6460.1516278873259272No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6300.14787239785655437No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT6010.14106557319331617No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5860.13754480181577916No Hit
GGCGGCGGTGGCGCAAGCGGTGGCGGCGGTG5580.13097269524437674No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4780.1121952478975127No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)