FastQCFastQC Report
Wed 31 May 2023
EGAF00007925803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403047
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15630.38779596424238366No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13580.3369334097512201No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10490.2602674129816126No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9780.2426516014261364No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8900.2208179194982223No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8720.2163519391038762No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6760.1677223748098857No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6580.16325639441553963No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6160.1528357734953988No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5750.1426632625971661No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5570.13819728220282002No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT5230.1297615414579441No Hit
GCGCAGTGGCGGGGAGCCGTCGTTTTCGGAGGACGGCGGCGGAC4880.12107769069116009No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4330.10743163948621376No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)