FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925804

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925804
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403047
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34810.8636709862621481No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32380.8033802509384761No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14400.3572784315476855No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12810.31782893806429524No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10640.2639890633102343No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9420.23371964063744424No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8650.2146151689505194No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6310.15655742382402052No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6160.1528357734953988No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5610.13918972229045248No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5590.13869350224663624No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5150.1277766612826792No Hit
GGCGGCGGTGGCGCAAGCGGTGGCGGCGGTG4700.11661171029681403No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4480.1111532898148355No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)