FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925805

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925805
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425580
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16060.3773673574886038No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12830.30147093378448236No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG11690.2746839607124395No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9660.22698435076836318No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9390.22064006767235303No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9340.21946520043235113No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6550.15390760844024626No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6510.15296771464824474No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6480.1522627943042436No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6350.14920813948023873No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5930.13933925466422292No Hit
GCGCAGTGGCGGGGAGCCGTCGTTTTCGGAGGACGGCGGCGGAC5630.13229005122421167No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT5380.12641571502420226No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4300.10103858264016166No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)