FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007925806

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925806
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425580
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA32630.7667183608252267No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14700.34541096856055264No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12240.2876075003524602No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12010.2822031110484515No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10320.242492598336388No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9240.21711546595234738No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7800.18327928944029326No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7050.16565628084026504No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6670.15672728981625078No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6650.15625734292025No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5700.1339348653602143No Hit
GGCGGCGGTGGCGCAAGCGGTGGCGGCGGTG5580.13111518398420977No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5580.13111518398420977No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4570.10738286573617183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)