FastQCFastQC Report
Sun 21 May 2023
EGAF00007925813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences369105
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG17010.46084447514934773No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12810.3470557158532125No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12610.3416372035057775No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10450.2831172701534794No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9690.2625269232332263No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT8150.22080437815797674No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7840.21240568401945248No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7730.2094255022283632No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7720.20915457661099143No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6910.18720960160387964No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT6800.1842294198127904No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6670.18070738678695764No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6280.17014128770945935No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5880.15930426301458933No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5400.14629983338074531No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5360.14521613091125832No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5030.13627558553799055No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5010.13573373430324703No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT4930.13356632936427304No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4760.12896059386895328No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4640.12570948646049226No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG4450.12056189973042901No Hit
TACCTGGATGTCCAGATCGAAGTAGAAACGGCGTGCCATGGCCG4120.11162135435716124No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG4050.10972487503555899No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4030.10918302380081549No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4000.10837024694870025No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC3810.10322266021863698No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT3750.10159710651440647No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)