FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007925814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences369105
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31990.8666910499722301No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27790.7529022906760949No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT16970.45976077267986076No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13560.3673751371560938No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12600.34136627788840573No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9920.2687582124327766No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8800.2384145432871405No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8180.221617155010092No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8170.22134622939272022No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7720.20915457661099143No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7600.20590346920253047No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7100.1923571883339429No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6990.18937700654285367No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6810.18450034543016214No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6100.16526462659676786No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5690.1541566762845261No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5310.14386150282439955No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5230.14169409788542556No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5210.14115224665068205No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5080.1376302136248493No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA4800.13004429633844028No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4800.13004429633844028No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4390.11893634602619851No Hit
GTGCCATTCATTCCGCCGATGGCGGATCTGC4330.117310792321968No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4170.11297598244401999No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA4070.11026672627030248No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4050.10972487503555899No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC3980.10782839571395672No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA3890.10539006515761098No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG3840.10403543707075222No Hit
CTGGACAGCCTGCGCATGGAGATGGAACGTC3770.10213895774914997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)