FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925816

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925816
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences389367
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29400.7550716932867962No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT18520.4756438013493697No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14910.38292921588116097No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13410.34440514989714077No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11280.28970097619983204No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8820.22652150798603887No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8750.22472371824011791No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8640.22189862006795646No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8530.21907352189579496No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8370.21496428819083283No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7710.1980136991578639No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7710.1980136991578639No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7260.18645647936265786No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6900.177210703526493No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6860.17618339510025247No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6120.15717818921480248No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5680.14587779652615657No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5570.1430526983539951No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5490.140998081501514No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5290.13586153937031129No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5100.13098182434566874No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4730.12147922140294376No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4560.11711316059142146No Hit
GTGCCATTCATTCCGCCGATGGCGGATCTGC4490.11531537084550053No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4430.11377440820613971No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4220.10838103896837686No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA4140.10632642211589581No Hit
CTGGACAGCCTGCGCATGGAGATGGAACGTC4140.10632642211589581No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4080.104785459476535No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4050.10401497815685459No Hit
TACTTCGATGGTTATGACCAGCAGTCTGTAG3980.10221718841093363No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT3970.10196036130437351No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC3960.10170353419781336No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG3920.10067622577157283No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)