FastQCFastQC Report
Wed 31 May 2023
EGAF00007925818

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925818
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences369890
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33280.8997269458487658No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26930.7280542864094731No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT17390.4701397712833545No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14070.38038335721430694No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12300.33253129308713403No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10700.28927518992132795No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8730.23601611289842928No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8570.23169050258184865No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8150.22033577550082456No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7670.20735894455108278No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7670.20735894455108278No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7150.1933007110221958No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6740.18221633458595798No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6660.1800535294276677No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6320.1708616075049339No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5410.1462596988293817No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5160.13950093270972452No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5130.13868988077536565No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5120.13841953013057937No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4990.1349049717483576No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA4930.1332828678796399No Hit
GTGCCATTCATTCCGCCGATGGCGGATCTGC4400.11895428370596664No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4220.11408797209981345No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4120.11138446565195058No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4040.10922166049366028No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4020.1086809592040877No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4010.1084106085593014No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG3950.10678850469058368No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC3860.10435534888750708No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG3850.10408499824272081No Hit
CTGGACAGCCTGCGCATGGAGATGGAACGTC3810.10300359566357566No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG3790.10246289437400309No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC3720.10057043986049907No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)