FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences399287
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18820.47134016384204847No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12390.3103031153030276No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12100.3030401691014233No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11960.2995339192109936No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11090.2777450806061805No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10390.26021383115403207No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9220.23091159992686966No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8630.21613526110291598No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8600.21538392184068103No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7890.1976022259677876No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7460.18683302987575354No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6190.15502633444114133No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6060.15177053097145662No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5750.1440066919283623No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC5510.13799597783048284No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5080.12722678173844879No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA4840.1212160676405693No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4630.11595669280492478No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA4600.11520535354268985No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4330.10844330018257545No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4070.10193169324320601No Hit

[OK]Adapter Content

Adapter graph