FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925822

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925822
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437714
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22520.5144911974485623No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10330.23599884856321707No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9260.21155366289403585No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7990.18253928364183006No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7770.17751317070050307No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5340.12199746866675501No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5040.1151436782922182No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)