FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925826

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925826
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438655
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22650.5163511187607573No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10380.23663243323340666No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9680.22067456201342742No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8090.18442739738518882No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8060.18374348861861828No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5430.12378748674926765No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5130.11694839908356225No Hit

[OK]Adapter Content

Adapter graph