FastQCFastQC Report
Wed 31 May 2023
EGAF00007925829

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925829
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405584
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15740.38808237011321944No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG11860.2924178468578642No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10690.26357055505148136No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9760.24064065643615132No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9420.23225768274882638No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8800.21697108367193974No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8080.199218904098781No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7980.19675332360250897No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7940.19576709140400017No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7430.18319263087301274No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7000.17259063473904296No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6540.16124896445619158No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6470.15952305810880113No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6040.14892106197483135No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5920.1459623653793049No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5810.14325022683340566No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5360.13215511460018145No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5230.1289498599550278No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5210.1284567438557734No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5200.1282101858061462No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5070.12500493116099254No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4990.12303246676397492No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4850.11958065406919405No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4840.11933409601956683No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4600.11341670282851393No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4470.11021144818336029No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4440.10947177403447868No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4380.10799242573671546No Hit
TTCGTCGGTCTCTTCCAGACGACGACCCGGAGACATACGGGCAG4220.10404749694268019No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4200.10355438084342578No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4180.10306126474417138No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4110.10133535839678094No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4080.10059568424789932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)