FastQCFastQC Report
Wed 31 May 2023
EGAF00007925831

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925831
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429048
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17030.3969252857489139No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG12820.29880106654733274No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11960.27875668922824487No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10410.24263019522291213No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9990.23284108071824133No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9500.22142044712945871No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9380.21862355727098134No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9300.21675896403199643No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9030.21046596185042232No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7100.16548264995991124No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6880.16035501855270273No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6770.15779120284909848No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6580.15336279390650928No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6500.15149820066752437No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6380.148701310809047No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6120.14264138278234603No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6070.14147601200798046No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6020.1403106412336149No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5940.13844604799462995No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5510.12842385933508604No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5470.1274915627155936No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5350.12469467285711622No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5300.12352930208275065No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4810.11210866849396804No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4770.11117637187447557No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4760.11094329771960247No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4730.11024407525498311No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4690.10931177863549067No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4640.1081464078611251No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4630.10791333370625197No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4610.10744718539650576No Hit
TTCGTCGGTCTCTTCCAGACGACGACCCGGAGACATACGGGCAG4550.10604874046726707No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4380.10208647983442412No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)