FastQCFastQC Report
Sun 21 May 2023
EGAF00007925832

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925832
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429048
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23890.5568141559918703No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17930.41790195968749416No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14940.34821278738043293No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG12560.2927411385206317No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10560.24612630754600884No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10060.23447259980235313No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9970.23237493240849508No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9160.2134959258637728No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8440.1967145867129086No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8350.19461691931905054No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8200.19112080699595382No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7320.17061028136711975No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6950.16198653763681453No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6750.15732505453935225No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6700.15615968376498668No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6660.15522738714549422No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6550.15266357144188997No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6420.14963360742853948No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6330.14753594003468143No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6240.1454382726408234No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5940.13844604799462995No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5920.13797989968488375No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5760.13425071320691392No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5710.13308534243254835No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5510.12842385933508604No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5420.12632619194122802No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5400.1258600436314818No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5080.11840167067554214No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5010.11677015159143032No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4890.11397326173295295No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4850.1130409651134605No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4800.11187559433909493No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4720.11001100110011No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4450.1037179989185359No Hit
ACCCTGGAACCGGTATCCCGCATTCGTTCTC4440.1034849247636628No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4340.10115418321493166No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)