FastQCFastQC Report
Sun 21 May 2023
EGAF00007925833

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925833
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406640
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15580.3831398780247885No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG12080.2970686602400157No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10780.2650993507771001No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9810.24124532756246309No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9680.23804839661617153No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8940.21985048199881957No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8180.20116073185126893No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8120.19968522526067284No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7720.1898485146566988No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6800.16722408026755853No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6710.16501082038166437No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6370.15664961636828645No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6090.14976391894550464No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6050.14878024788510721No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6000.14755065905961046No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5790.1423863859925241No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5720.14066496163682865No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5680.13968129057643125No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5540.13623844186504033No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5540.13623844186504033No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5330.13107416879795397No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4820.11853236277788709No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4810.11828644501278773No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4720.11607318512689357No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4660.11459767853629747No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4400.10820381664371434No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4310.10599055675782018No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4290.1054987212276215No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4280.10525280346252214No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4240.10426913240212472No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4220.10377729687192604No Hit
TTCGTCGGTCTCTTCCAGACGACGACCCGGAGACATACGGGCAG4220.10377729687192604No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4200.10328546134172734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)