FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449366
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18750.41725453194055623No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17200.38276149063347026No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16780.3734149891180018No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC14840.33024305354655226No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14260.31733598002519103No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13780.30665426400751283No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10560.2349977523889213No Hit
ACGCAGACCGGTCACCATGCGCAGCTTTGCAGAACGTACGTATT10530.2343301451378164No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10360.23054703738155535No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10070.22409350062087474No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9580.2131892488528282No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9540.21229910585135503No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8720.1940511743211547No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8230.18314692255310816No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7790.1733553495369031No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7140.1588905257629638No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6980.15532995375707107No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6880.15310459625338813No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6170.13730455797723906No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5980.13307637872024142No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5690.1266228419595608No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5280.11749887619446064No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5010.11149041093451663No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4870.10837491042936047No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG4860.10815237467899218No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4780.1063720886760458No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4770.10614955292567751No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4580.10192137366867987No Hit
ACCCAGCGGGATGGCCGGCAGAGAATAGCCATCCGGAAAAACGG4500.1001410876657335No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)