FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925838

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925838
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449366
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39760.8848021434643475No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24280.5403168018942244No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22370.4978124735738797No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22310.4964772590716699No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17470.38876995589341423No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16700.3716347031150554No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16040.35694734359074787No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14900.33157826804876206No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC14720.3275726245421327No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10860.2416738248999702No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10520.23410760938744807No Hit
ATCAACTCCAACGCCCCGATGGATAAATGCG10490.23344000213634322No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10060.22387096487050648No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9300.20695824784251587No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9000.200282175331467No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8440.1878201733108424No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7360.16378631227106635No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7010.15599756100817597No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6780.15087923874970516No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6350.1413102014838684No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6300.1401975227320269No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5750.12795805646177058No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5660.1259552347084559No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5250.11683126894335574No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5230.11638619744261916No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5200.11571859019151426No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA5020.11171294668488492No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4890.10881998193009708No Hit
ATCCCTCTGGGCATCGACGTAGGTGGCGGTC4700.10459180267309945No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4690.10436926692273113No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)