FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925839

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925839
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411994
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9140.22184789098870372No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC7430.1803424321713423No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7180.17427438263664033No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6520.15825473186502717No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5890.1429632470375782No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5170.12548726437763658No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5070.12306004456375577No Hit
ACGGTGCGCACGGGTGATAACGTCGTGGTCATCGGAACGGTCGT4280.10388500803409759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)