FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007925840

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925840
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411994
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA14410.3497623751802211No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10180.24709097705306388No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8320.2019446885148813No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7790.18908042350131313No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG7730.18762409161298466No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7710.1871386476502085No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6210.15073035044199673No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6110.14830313062811595No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5340.1296135380612339No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5060.1228173225823677No Hit
CATTCTAACGATCAGCACGCGGGTGATCACA4840.11747743899182998No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4820.11699199502905383No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)