FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435549
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG37010.8497321770914409No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT30730.7055463334779783No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT22180.5092423584946815No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA16170.3712555877754283No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT15180.3485256538299939No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT12710.291815616612597No Hit
GTCAGTGCCGAAGGACTGACGCAGCTTGGTGCGAACCTGGTTTG10310.23671274644184695No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG10090.2316616500095282No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA9120.20939090664885007No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT7980.1832170433177438No Hit
GTAACCCTGCGCGATTTTAATCTGAGAGACACCGTATTTATCGG7740.17770675630066882No Hit
TTCCAGTTCGGACATACGGTCGTACGGAATAAAGTGGAAGTGAT7740.17770675630066882No Hit
CAGGGTCGGAATCTGATGACGGGTTTTGCATGCAACACCGTTCT7700.1767883751311563No Hit
AGATTTCATAGCGAATGGCAGGGTCGCAATGTCTGCAATGGTCG7410.1701301116521907No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6770.15543601293999068No Hit
CACATCTGCGCTCGCAGAGATGCCAGCGAAGTAACCGGTTGCAT6680.15336965530858754No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC6640.15245127413907505No Hit
TTTAACGTTAGAGGTGAATACGCCACCGAAGCGTGGACCCAGAC6120.14051231893541255No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5780.13270607899455628No Hit
CACAGCCGGCGGACCGGTATCAGACGGAGAGACGGTCGGTGGCG5690.13063972136315316No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5660.1299509354860188No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT5530.12696619668510317No Hit
GTTCAGGCCACGGATCTGACCGCGCATTTTTTCGCTAATGGACA5480.12581822022321254No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5380.12352226729943129No Hit
ATCCTTCAGCTCCAGAACTTCCAGCTGCGCATTTTTCAGACGGT5300.1216855049604063No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA5180.11893036145186879No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5020.11525683677381879No Hit
CGGGGCGACTTCACGTTGAGCAGTCTGTACGTTGCCACGCAGTT4920.11296088385003752No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT4770.10951695446436566No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4730.10859857329485316No Hit
GTAGCCAGAACCATCGGAACCGGTAACCGGAGCTGCTTTGGAGC4650.10676181095582817No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4650.10676181095582817No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT4490.10308828627777816No Hit
TTCACCGCTGGTACGAATGATGTTACGTACTTTAATCATTTTAT4400.10102192864637505No Hit
ATCCTTCATCAGCAGTTCTTCGGAAAACAGGGCATCATACGGCA4400.10102192864637505No Hit
GTAGAAACCCGGGCCCTTGCCTTTGTGGCCGCAAAAGTCACAAA4390.1007923333539969No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)