FastQCFastQC Report
Wed 31 May 2023
EGAF00007925842

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925842
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435549
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGAAGTGATTGACGTTGAAACCACTGAAG36590.8400891748115596No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT31690.7275874815462784No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA23460.5386305559190815No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA17020.39077118762756885No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC15000.3443929385671876No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG14120.3241885528379126No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11550.26518256269673446No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT10770.2472741298912407No Hit
AACACTTCTAGCGGTCAGACCCAATCTACCA10540.24199343816654384No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG9190.21099807369549692No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8500.1951559985214063No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8500.1951559985214063No Hit
CTGGTGGACTACCAGGATAAGATGATCAAAG8420.1933192361823813No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT8290.19033449738146568No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC8080.18551299624152506No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC7930.1820690668558532No Hit
GGTCGTAAAGTACGCGGTGTCATTCCGACTG7580.1740332316226188No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA7570.17380363633024068No Hit
ATGGGTGTTGACATGGTCGAAATCGACCTGA7310.16783415872840943No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7300.1676045634360313No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6910.15865034703328443No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6810.15635439410950316No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG6790.15589520352474695No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA6740.1547472270628563No Hit
GTGGAAGCGTGGATCCCGCGCGCTCCGCGTG6440.14785936829151256No Hit
ATTGAAGTTATCGACGTTGAAACCACTGAAG6110.14028272364303443No Hit
GAAGTTCACACCATGGTTGTACAGCACAACA5700.1308693166555313No Hit
GGTTACCAGAAACTGCGTCATAACATCGACA5640.12949174490126256No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC5620.1290325543165063No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5460.1253590296384563No Hit
CTGTCCGGTCAGCAGTTCCTGAAATGTCCAC5300.1216855049604063No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG5100.1170935991128438No Hit
TCCCAGTCTTCCCAGAAATCCGAGAACCTGA5090.11686400382046568No Hit
CTGGACAGCCTGCGCATGGAGATGGAACGTC4990.11456805089668443No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4940.11342007443479378No Hit
GGTGTTCCGGCGTCTACCTGGGCCGCAATCA4910.11273128855765942No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4650.10676181095582817No Hit
AGCAAACGTGTGAACGATGGTAACCACCACT4580.10515464390918128No Hit
CAGATCGTGATCAAAATTACCGATCAGGGTT4480.10285869098540003No Hit
ACCCTGACCTCTATCGGTTCTAAAGCATCCA4390.1007923333539969No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4380.10056273806161879No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)