FastQCFastQC Report
Wed 31 May 2023
EGAF00007925843

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925843
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437674
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8480.19375151368370064No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8360.19100974698062942No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7630.17433066620361273No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7460.17044649670759515No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT5720.13069087951306224No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5460.12475038498974123No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5290.12086621549372363No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5220.11926685158359875No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC4470.10213080968940352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)