FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007925844

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925844
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437674
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19340.4418814003116475No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11030.25201405612396444No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9220.21065907501930664No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7990.18255596631282645No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7610.1738737050864342No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT6230.14234338800111498No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5620.12840607392716955No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5490.12543582666550904No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4750.10852826532990309No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG4500.10281625136517134No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)