FastQCFastQC Report
Wed 31 May 2023
EGAF00007925847

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925847
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440116
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8350.18972270946750402No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8340.18949549664179444No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7750.17608993992492888No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7270.16518372429086878No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT5640.12814803370020633No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5420.12314935153459543No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5370.12201328740604749No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5080.11542411546046952No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT4550.10338183569786148No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)