FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007925848

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925848
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440116
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19190.4360214125366949No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11310.2569777058775414No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9000.20449154313862708No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7970.18108862209053977No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7810.17745321687918642No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT6260.14223522889420062No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5650.1283752465259159No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5270.11974115914895164No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4610.10474511265211899No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG4500.10224577156931354No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)