FastQCFastQC Report
Sun 21 May 2023
EGAF00007925851

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925851
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380503
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG22270.5852779084527586No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17990.47279522106264604No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG17980.4725324110453794No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15350.4034133765042588No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13870.36451749394879934No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11580.3043339999947438No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG10500.27595051812994903No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9210.2420480259025553No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8990.2362662055226897No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8100.21287611398596068No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7410.19474222279456402No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7010.18422982210389932No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6610.1737174214132346No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6560.1724033713269015No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5610.14743641968657276No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5610.14743641968657276No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5260.13823806908224112No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4910.1290397184779095No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG4800.1261488082879767No Hit
GCTGGTACCGTTCAGAGAAGCATAGGTGGAGCCCGGGTAGGTAG4700.12352070811531052No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG4590.12062979792537773No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4460.1172132677009117No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4390.11537359758004535No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4340.11405954749371228No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4230.11116863730377946No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT4030.10591243695844711No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT3960.10407276683758078No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG3930.10328433678578092No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC3870.10170747668218122No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT3850.10118185664764799No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)