FastQCFastQC Report
Sun 21 May 2023
EGAF00007925852

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925852
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380503
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34920.9177325802950306No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG22350.5873803885908915No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19390.5095886234799726No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17830.46859026078638016No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11410.2998662297012113No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10280.27016869775008345No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG10250.2693802676982836No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9650.2536116666622865No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8970.23574058548815646No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8540.2244397547456919No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7680.2018380932607627No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7280.191325692570098No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7200.18922321243196505No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7100.18659511225929887No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6900.1813389119139665No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5560.14612236960023967No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5430.14270583937577364No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5400.14191740932397381No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4910.1290397184779095No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC4890.12851409844337627No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4640.12194384801171082No Hit
CCGGCTCGTTACGCCAACGCCATGGCGGTGG4640.12194384801171082No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4600.12089260794264434No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4580.1203669879081111No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4560.11984136787357787No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4540.11931574783904464No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4510.11852731778724478No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4170.10959177720017976No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4170.10959177720017976No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4030.10591243695844711No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA3880.10197028669944783No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA3810.10013061657858152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)