FastQCFastQC Report
Wed 31 May 2023
EGAF00007925853

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925853
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences361452
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG20480.566603587751624No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17520.4847116629593971No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG17160.4747518342684506No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14070.38926330467115966No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12830.3549572280690106No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10680.2954749178314133No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG9920.2744486128171929No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8570.23709925522614347No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8450.2337793123291613No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7260.2008565452674214No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7170.1983665880946848No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6620.18315018315018314No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6560.18149021170169205No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6400.1770636211723825No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5880.16267720195212643No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5400.14939743036419773No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5010.13860761594900567No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4850.13418102541969612No Hit
GCTGGTACCGTTCAGAGAAGCATAGGTGGAGCCCGGGTAGGTAG4830.1336277016035324No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG4650.12864778725805917No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG4530.125327844361077No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4360.12062459192368558No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT4070.112601396589312No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4060.11232473468123015No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG3900.10789814415192059No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT3840.1062381727034295No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA3810.10540818697918396No Hit
GCGACGTTCCTGAGAAGAAGTCGGGACACCCTGAGGCGGTGGCG3620.10015161072562885No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)