FastQCFastQC Report
Wed 31 May 2023
EGAF00007925854

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925854
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences361452
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32570.9010878346225779No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31940.8836581344134213No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG20100.5560904352445138No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18200.5035246727089627No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18050.499374744087735No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10470.2896650177616945No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9700.26836205083939224No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9630.26642541748281934No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8800.24346247911202595No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8350.2310126932483428No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7960.22022287883315073No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7440.20583645961289465No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7170.1983665880946848No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7010.19393999756537522No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6980.19311001184112966No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5270.1458008255591337No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5240.14497083983488818No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5010.13860761594900567No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4820.13335103969545056No Hit
CCGGCTCGTTACGCCAACGCCATGGCGGTGG4680.1294777729823047No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC4670.12920111107422286No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4480.12394453482066775No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4480.12394453482066775No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4370.12090125383176743No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4210.11647466330245787No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4080.11287805849739385No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4010.1109414251408209No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT3940.10900479178424798No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA3750.10374821553069287No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA3710.10264156789836548No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG3660.10125825835795624No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)