FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925855

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925855
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences362108
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG20900.5771758701823765No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17760.4904614093033018No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG17460.4821765882002054No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13870.38303489566648624No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13080.3612182000949993No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG10570.29190186353242675No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10540.29107338142211714No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9190.25379168645818373No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8870.24495454394821434No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7300.201597313508677No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6900.19055088537121523No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6790.18751311763341325No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6580.1817137428612458No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6210.1714957968340937No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5670.15658311884852033No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5440.1502314226694798No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5120.14139428015951042No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4820.1331094590564141No Hit
GCTGGTACCGTTCAGAGAAGCATAGGTGGAGCCCGGGTAGGTAG4740.13090017342892174No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG4600.12703392358081014No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG4350.12012990599489656No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4220.11653981685022148No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4080.11267356700210987No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4010.11074044207805406No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG3910.10797883504368863No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT3820.10549338871275973No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)