FastQCFastQC Report
Wed 31 May 2023
EGAF00007925856

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925856
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences362108
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33370.9215482673677466No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33080.9135396069680869No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG20630.5697195311895898No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18210.5028886409579462No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17500.4832812310139516No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10630.2935588277530461No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG10400.28720713157400557No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10260.28334088172589394No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9210.25434400786505684No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7950.21954775923205233No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7870.21733847360455993No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7180.19828338506743845No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7170.1980072243640019No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7050.19469329592276338No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6700.18502767130248435No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5580.15409767251759143No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5350.14774597633855094No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4930.1361472267942161No Hit
CCGGCTCGTTACGCCAACGCCATGGCGGTGG4740.13090017342892174No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4720.13034785202204868No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC4550.12565312006362742No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4440.12261535232582545No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4310.11902526318115036No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4300.11874910247771384No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4160.11488285262960221No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4090.11294972770554643No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG3850.10632187082306936No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG3820.10549338871275973No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG3730.10300794238183084No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT3650.1007986567543385No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)