FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences362539
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT19170.5287706977732052No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17680.48767167118572075No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT16980.4683634036613992No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15350.4234027235690505No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14410.39747447860781876No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14410.39747447860781876No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13850.3820278645883615No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG12530.3456179886853552No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11880.3276888831270567No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG11430.31527642543285No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG10180.28079737628227586No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC10090.2783148847434345No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8870.24466333277247412No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8760.2416291764472236No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8580.23666419336954092No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7590.2093567864422862No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7490.20659846251024028No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7390.20384013857819433No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6880.1897726865247601No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6880.1897726865247601No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT6650.18342854148105445No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6640.18315270908784986No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6540.18039438515580392No Hit
CAGTTTCAGGATATCAGACGGCTGCACGTCTTCCCAGACGGACA6420.1770843964373488No Hit
GTCTACAACGCGGAAAGTCGCATCCGGAGCAATCATTTTAACGT5360.14784616275766194No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5360.14784616275766194No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5250.1448120064324114No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5230.14426034164600224No Hit
TGCCATGCCACGCAGCGCGATGGCCGCAGCAATCTGGTCGTCCT5100.1406745205343425No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG5070.13984702335472873No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4840.1335028783110231No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4700.12964122480615878No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4650.12826206284013583No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4570.12605540369449908No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT4560.1257795713012945No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4350.11998709104399802No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT4340.11971125865079343No Hit
CGGGATCGGGCGCAGCGGCATCGGCCATTGACGCGGGGCTGCGG4210.11612543753913372No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4200.11584960514592912No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG3850.10619547138376838No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC3650.10067882351967651No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG3630.10012715873326732No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)