FastQCFastQC Report
Sun 21 May 2023
EGAF00007925858

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925858
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences362539
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35700.9847216437403976No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31780.8765953456041972No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG19490.5375973343557521No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19080.5262882062343637No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18510.5105657598217019No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA16900.46615674451576244No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14170.39085450117090853No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13060.36023710552519866No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG12200.33651551970960364No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11760.32437889440860157No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10760.29679565508814226No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC10130.27941821431625286No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9510.2623166059375681No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9380.2587307848259084No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9220.2543174665346349No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9160.2526624721754073No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8860.2443875003792695No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7650.21101178080151378No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7400.2041159709713989No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7200.1985993231073071No Hit
TGTGCAGCTCGCACCAAAACCGTGAACGCGG6910.19060018370437387No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6870.1894968541315555No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG6850.1889451893451463No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6640.18315270908784986No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6150.1696369218208248No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6050.16687859788877887No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5810.16025862045186862No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5790.15970695566545945No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5500.15170781626252625No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG5430.14977698951009408No Hit
AACGCATTCCGTCTGAAGAGCCTGGCTAAAT5430.14977698951009408No Hit
ACCGCAGCTGACGCGGCGGAACAGGATGGCA5280.14563950361202518No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5200.14343284446638843No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5160.14232951489357007No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4910.13543370506345526No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4490.12384874454886233No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4440.12246958258283935No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4360.12026292343720262No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4340.11971125865079343No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4260.1175045995051567No Hit
TCCCCGACCACTTCCCAGCTGTCTAGCTCTG4190.11557377275272453No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC3990.11005712488863267No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT3980.10978129249542808No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC3760.10371297984492704No Hit
CCGCAGGTAACTGATGTGATCGGCGACGAAG3680.10150632069929029No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC3640.10040299112647191No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)