FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007925859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences363899
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT18990.5218480952132323No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17990.4943679427533464No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT16800.4616665613260822No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15540.42704156922662606No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15230.41852272196406143No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14020.3852717374875996No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13340.36658523381487723No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG12890.35421916520792857No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG11440.31437294414109407No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11160.30667850145232606No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG10140.2786487459432425No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC9830.2701298986806779No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8910.2448481584175829No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8570.23550490658122172No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8420.23138288371223883No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7290.20033031143256783No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7270.19978070838337011No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7140.19620828856358494No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6930.19043745654700892No Hit
CAGTTTCAGGATATCAGACGGCTGCACGTCTTCCCAGACGGACA6860.18851384587481693No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6800.18686503672722377No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6700.18411702148123518No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6630.18219341080904317No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT6460.1775217848908626No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5860.16103369341493107No Hit
GTCTACAACGCGGAAAGTCGCATCCGGAGCAATCATTTTAACGT5670.15581246444755276No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5530.15196524310316872No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG5170.1420723882176098No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5070.13932437297162126No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5060.1390495714470224No Hit
TGCCATGCCACGCAGCGCGATGGCCGCAGCAATCTGGTCGTCCT4920.13520235010263837No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4900.13465274705344066No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4860.13355354095504524No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4780.13135512875825436No Hit
CGGGATCGGGCGCAGCGGCATCGGCCATTGACGCGGGGCTGCGG4570.12558429674167831No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4500.12366068606948631No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT4440.12201187692189316No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT4400.12091267082349771No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4120.11321822813472968No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT3950.1085466022165491No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC3730.10250096867537421No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG3710.10195136562617649No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT3680.10112696105237992No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG3640.10002775495398447No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)