FastQCFastQC Report
Wed 31 May 2023
EGAF00007925862

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925862
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465534
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16430.35292803533146877No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13390.2876266824764679No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12910.27731594255199404No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12740.27366422216207625No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC12110.26013137601120434No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11980.257338883948326No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC11480.24659852986033243No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10290.22103648713090773No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10110.21716995965923003No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8940.19203753109332508No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8330.17893429910597292No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7940.17055682291733795No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7860.168838366263259No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7660.16454222462806153No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7550.16217934672870293No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7530.1617497325651832No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7480.16067569715638386No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7400.15895724050230486No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6800.1460688155967126No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5810.12480291450248532No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5810.12480291450248532No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5590.12007715870376814No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5570.1196475445402484No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5470.11749947372264968No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5420.11642543831385033No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5040.10826276920697521No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC4800.10310739924473829No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)