FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007925864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398428
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33560.8423102793980344No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27180.6821809712168824No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14250.35765558645476725No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12250.3074583111628701No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12240.30720732478641055No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11030.2768379732348128No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9740.24446073067153914No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8700.21835814751975263No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7310.18347104119188412No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6990.17543947714518057No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6680.1676588994749365No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6390.1603802945576114No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5820.14607407109942072No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5580.14005039806439307No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5360.13452869778228438No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5270.132269820394149No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4890.12273233808868854No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4400.11043400564217373No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4310.10817512825403836No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4110.10315540072484866No Hit

[OK]Adapter Content

Adapter graph