FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences401494
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34720.8647700837372414No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28530.710595924223027No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14030.3494448235839141No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12250.30511041260890576No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12180.3033669245368549No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11180.278459952078985No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9980.24857158512954117No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8970.22341554294709262No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7720.19228182737475527No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6850.1706127613364085No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6390.15915555400578837No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5970.14869462557348306No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5870.14620392832769605No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5370.13375044209876114No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5350.13325230264960372No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5030.12528207146308537No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4710.11731184027656703No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4460.11108509716209955No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4420.11008881826378478No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4390.10934160909004867No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4190.1043602145984747No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4090.10186951735268772No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)