FastQCFastQC Report
Wed 31 May 2023
EGAF00007925869

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925869
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412127
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19540.47412569426414675No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17570.42632489499595994No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17410.4224425965782392No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17000.41249420688282984No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG15590.3782814520766657No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG13240.32126019406639217No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11520.27952548607589406No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG11110.26957709638048466No Hit
GCGAGAGGTCGCAGATTTGTACGGGTGCAGGGTATCGGTACGAG10940.26545215431165636No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9960.24167307650311676No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT9870.23948928364314884No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT9810.23803342173650358No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9660.23439376696989034No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9540.2314820431565998No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9140.22177629711229793No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9050.21959250425233No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8880.21546756218350172No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT8530.20697503439473752No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8220.1994530812104036No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT8160.1979972193037583No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7530.18271066928398286No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7350.17834308356404702No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7140.17324756689078852No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6960.16887998117085268No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6940.1683946938686376No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6550.15893159147544325No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6540.1586889478243357No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6360.15432136210439987No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG6210.15068170733778666No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6010.1458288343156357No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5990.14534354701342062No Hit
GCCCAGGGTGATCTGCTGGACACGATCAGAGTAACCGCACGCTT5940.1441303287578829No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5800.14073331764237723No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5760.13976274303794703No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5310.12884377873810743No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5300.12860113508699988No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG4890.11865274539159046No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4880.1184101017404829No Hit
ACCCAGGGTGATGGAGCGAACACGGTCGCTGTAGCCGCATTCTT4790.11622630888051498No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG4650.11282929776500934No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4620.11210136681168668No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG4590.11137343585836405No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4550.11040286125393386No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG4250.10312355172070746No Hit
TTCTTCCAGTGCGCTCAGTTTAGAGTATGGAATGAAATGATAGT4220.10239562076738482No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4200.10191033346516971No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)