FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007925872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422231
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13580.3216248925351289No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9890.23423197254583392No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9350.22144276474252247No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8600.20367997612681213No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7840.18568035032955893No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7530.178338397701732No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG6720.1591545859967648No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6400.15157579618739506No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6310.14944426155350982No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6120.1449443551041965No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5780.13689189093174114No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5730.13570770502402713No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTG5310.12576054339922932No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5160.12220798567608726No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4650.11012928941740421No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4510.10681356887580495No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4450.10539254578654812No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA4290.10160315088186325No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)